genotyping by sequencing (GBS) (accessions genotyped by Gyawali et al., 2021)

Trait category:
Genomic and/or genotypic data

Trait information:

Dataset background

This selection lists all accessions genotyped by Gyawali et al. (2021). The authors genotyped 72 CGN Spinacia turkestanica accessions through genotyping by sequencing (GBS) to study the domestication of S. oleracea. The authors extracted 7065 SNP markers from their GBS dataset.

The .vcf file with SNP information is available online and can be accessed (raw sequence data are not available). An Excel sheet (available below) summarizes all available genetic and genomic data for CGN spinach accessions, including data access details for the Gyawali dataset.

Excel with background information

Excel spinach genomic data

Publication

Gyawali et al., (2021). Genetic diversity, structure, and selective sweeps in Spinacia turkestanica associated with the domestication of cultivated spinach. Frontiers in Genetics 12, article 740437. doi: 10.3389/fgene.2021.740437