whole genome sequencing (all sequenced CGN accessions)

Trait category:
Genomic and/or genotypic data

Trait information:

Dataset background

This selection lists all CGN spinach accessions for which whole genome sequencing data are available. Currently this comprises one publication. Severing et al. (2023) sequenced a male and female genotype from two spinach crop wild relatives: Spinacia tetrandra (CGN25471; Armenia) and S. turkestanica (CGN25259; Uzbekistan) using both illumina and Oxford Nanpore Technology (ONT) reads. Raw sequencing reads are available from the European Nucleotide Archive (ENA) under BioProject accession number PRJEB59005.

The Excel sheet (below) summarizes all available genetic and genomic data for CGN spinach accessions, including access details for this dataset.

Excel with background information

Excel spinach genomic data

Publication

Severing et al.,, (2023). Chromosome level assembly of wild spinach provides insights into the divergence of homo- and heteromorphic plant sex-chromosomes. BioRxiv. doi: 10.1101/2023.07.17.549201